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@article{ArdisterAGFY26,
  author = {Ardister, J. and Geddes, J. and Feeny, B. F. and Yuan, J.},
  title = {Modeling and computational fluid dynamics validation of a nonholonomically constrained two-rigid-body swimming system},
  journal = {J. Fluids Struct.},
  year = {2026},
  volume = {142},
  pages = {104510},
  doi = {10.1016/j.jfluidstructs.2026.104510},
}

@article{YuanYGP25,
  author = {Yuan, J. and Gatzek, M. and Pargal, S.},
  title = {Near-wall characteristics of non-equilibrium turbulent boundary layers on rough walls},
  journal = {Int. J. Heat Fluid Flow},
  year = {2025},
  volume = {116},
  pages = {109937},
  doi = {10.1016/j.ijheatfluidflow.2025.109937},
}

@article{PargalPYM24a,
  author = {Pargal, S. and Yuan, J. and Moreau, S.},
  title = {A generalized wall-pressure spectral model for non-equilibrium boundary layers},
  journal = {J. Fluid Mech.},
  year = {2024},
  volume = {996},
  pages = {A27},
  doi = {10.1017/jfm.2024.665},
}

@inproceedings{YuanYGP24,
  author = {Yuan, J. and Gatzek, M. and Pargal, S.},
  title = {Near-wall characteristics of non-equilibrium turbulent boundary layers on rough walls},
  booktitle = {TSFP13, Montreal},
  year = {2024},
}

@article{CaiazzoCPW23,
  author = {Caiazzo, A. and Pargal, S. and Wu, H. and Sanjose, M. and Yuan, J. and Moreau, S.},
  title = {On the effect of adverse pressure gradients on wall-pressure statistics in a controlled-diffusion aerofoil turbulent boundary layer},
  journal = {J. Fluid Mech.},
  year = {2023},
  volume = {960},
  pages = {A17},
  doi = {10.1017/jfm.2023.157},
}

@article{Aghaei-JouybariAYLBJ23,
  author = {Aghaei-Jouybari, M. and Yuan, J. and Li, Z. and Brereton, G. J. and Jaberi, F. A.},
  title = {Supersonic turbulent flows over sinusoidal rough walls},
  journal = {J. Fluid Mech.},
  year = {2023},
  volume = {956},
  pages = {A3},
  doi = {10.1017/jfm.2022.1049},
}

@article{YangYZYK23,
  author = {Yang, X. and Zhang, W. and Yuan, J. and Kunz, R. F.},
  title = {In search of a universal rough wall model},
  journal = {J. Fluids Eng.},
  year = {2023},
  volume = {145},
  pages = {101302},
  doi = {10.1115/1.4062820},
}

@article{MangavelliMY23,
  author = {Mangavelli, S. C. and Yuan, J.},
  title = {Effects of form-induced velocity in rough-wall turbulent channel flows},
  journal = {J. Turbul.},
  year = {2022},
  doi = {10.1080/14685248.2022.2131799},
}

@article{Aghaei-JouybariASY22,
  author = {Aghaei Jouybari, M. and Seo, J.-H. and Yuan, J. and Mittal, R. and Meneveau, C.},
  title = {Contributions to pressure drag in rough-wall turbulent flows: insights from force partitioning},
  journal = {Phys. Rev. Fluids},
  year = {2022},
  volume = {7},
  pages = {084602},
  doi = {10.1103/PhysRevFluids.7.084602},
}

@article{ShenSYP22,
  author = {Shen, G. and Yuan, J. and Phanikumar, M. S.},
  title = {Quantifying the effects of bed roughness on transit time distributions via direct numerical simulations of turbulent hyporheic exchange},
  journal = {Water Resour. Res.},
  year = {2022},
  volume = {58},
  pages = {e2021WR030503},
  doi = {10.1029/2021WR030503},
}

@article{PargalPWY22,
  author = {Pargal, S. and Wu, H. and Yuan, J. and Moreau, S.},
  title = {Adverse-pressure-gradient turbulent boundary layer on convex wall},
  journal = {Phys. Fluids},
  year = {2022},
  volume = {34},
  pages = {035107},
  doi = {10.1063/5.0083919},
}

@inproceedings{ShenYP22,
  author = {Shen, G. and Yuan, J. and Phanikumar, M. S.},
  title = {Direct numerical simulations of hyporheic exchange induced by rough bedforms},
  booktitle = {TSFP-12, Osaka},
  year = {2022},
}

@inproceedings{BreretonBYA22,
  author = {Brereton, G. J. and Yuan, J. and Aghaei-Jouybari, M.},
  title = {DNS data-driven modeling of turbulent flows over rough walls},
  booktitle = {34th Symp. Naval Hydrodynamics},
  year = {2022},
}

@article{BreretonBAY21f,
  author = {Brereton, G. J. and Aghaei Jouybari, M. and Yuan, J.},
  title = {Towards modeling of turbulent flow over surfaces of arbitrary roughness},
  journal = {Phys. Fluids},
  year = {2021},
  volume = {33},
  pages = {065121},
  doi = {10.1063/5.0051097},
}

@article{MangavelliMYB21k,
  author = {Mangavelli, S. C. and Yuan, J. and Brereton, G. J.},
  title = {Effects of surface roughness topography in transient channel flows},
  journal = {J. Turbul.},
  year = {2021},
  pages = {434--460},
  doi = {10.1080/14685248.2021.1927057},
}

@article{Aghaei-JouybariAYBM21,
  author = {Aghaei Jouybari, M. and Yuan, J. and Brereton, G. J. and Murillo, M. S.},
  title = {Data-driven prediction of the equivalent sand-grain height in rough-wall turbulent flows},
  journal = {J. Fluid Mech.},
  year = {2021},
  volume = {912},
  pages = {A8},
  doi = {10.1017/jfm.2020.1085},
}

@article{PargalPYB21v,
  author = {Pargal, S. and Yuan, J. and Brereton, G. J.},
  title = {Impulse response of turbulent flow in smooth and riblet-walled channels to a sudden velocity increase},
  journal = {J. Turbul.},
  year = {2021},
  doi = {10.1080/14685248.2021.1885676},
}

@inproceedings{PargalPWYM21,
  author = {Pargal, S. and Wu, H. and Yuan, J. and Moreau, S.},
  title = {Non-equilibrium turbulent boundary layer with adverse pressure gradient and convex wall curvature},
  booktitle = {CFD Society of Canada},
  year = {2021},
}

@article{YangYXLLY20a,
  author = {Yang, X. and Xia, X. and Lee, Z. and Lv, Y. and Yuan, J.},
  title = {Mean flow scaling in a spanwise rotating channel},
  journal = {Phys. Rev. Fluids},
  year = {2020},
  volume = {5},
  pages = {074603},
  doi = {10.1103/PhysRevFluids.5.074603},
}

@article{ShenSYP20b,
  author = {Shen, G. and Yuan, J. and Phanikumar, M. S.},
  title = {Direct numerical simulations of turbulence and hyporheic mixing near sediment–water interfaces},
  journal = {J. Fluid Mech.},
  year = {2020},
  volume = {892},
  pages = {A20},
  doi = {10.1017/jfm.2020.173},
}

@inproceedings{Aghaei-JouybariAYB20,
  author = {Aghaei Jouybari, M. and Yuan, J. and Brereton, G. J.},
  title = {DNS data-driven modeling of turbulent flows over rough walls},
  booktitle = {33rd Symp. Naval Hydrodynamics},
  year = {2020},
}

@article{YuanYMBIV19a,
  author = {Yuan, J. and Mishra, A. A. and Brereton, G. J. and Iaccarino, G. and Vartdal, M.},
  title = {Single-point structure tensors in turbulent channel flows with smooth and wavy walls},
  journal = {Phys. Fluids},
  year = {2019},
  volume = {31},
  doi = {10.1063/1.5130629},
}

@article{AghaeiBY19a,
  author = {Aghaei Jouybari, M. and Brereton, G. and Yuan, J.},
  title = {Turbulence structures over realistic and synthetic wall roughness in open channel flow at Reτ = 1000},
  journal = {J. Turbul.},
  year = {2019},
  volume = {20},
  pages = {723--749},
  doi = {10.1080/14685248.2019.1706741},
}

@article{WuWPY19b,
  author = {Wu, W. and Piomelli, U. and Yuan, J.},
  title = {Turbulence statistics in rotating channel flows with rough walls},
  journal = {Int. J. Heat Fluid Flow},
  year = {2019},
  volume = {80},
  pages = {108467},
  doi = {10.1016/j.ijheatfluidflow.2019.108467},
}

@inproceedings{YuanYB19a,
  author = {Yuan, J. and Brereton, G. J.},
  title = {Structure of turbulent flows on heterogeneous irregular rough surfaces},
  booktitle = {TSFP-11},
  year = {2019},
}

@article{YuanYA18,
  author = {Yuan, J. and Aghaei Jouybari, M.},
  title = {Topographical effects of roughness on turbulence statistics in roughness sublayer},
  journal = {Phys. Rev. Fluids},
  year = {2018},
  volume = {3},
  pages = {114603},
  doi = {10.1103/PhysRevFluids.3.114603},
}

@article{BreretonBY18a,
  author = {Brereton, G. J. and Yuan, J.},
  title = {Wall-roughness eddy viscosity for Reynolds-averaged closures},
  journal = {Int. J. Heat Fluid Flow},
  year = {2018},
  volume = {73},
  pages = {74--81},
  doi = {10.1016/j.ijheatfluidflow.2018.07.009},
}

@inproceedings{YuanYBIM18a,
  author = {Yuan, J. and Brereton, G. J. and Iaccarino, G. and Mishra, A. A. and Vartdal, M.},
  title = {Single-point structure tensors in rough-wall turbulent channel flow},
  booktitle = {2018 CTR Summer Program},
  year = {2018},
}

@inproceedings{PiomelliPWY18a,
  author = {Piomelli, U. and Wu, W. and Yuan, J.},
  title = {Effect of roughness on wall-bounded flows subjected to spanwise rotation},
  booktitle = {ETMM12},
  year = {2018},
}

@inproceedings{YuanY17,
  author = {Yuan, J.},
  title = {Effects of surface roughness topography in developed and transient channel flows},
  booktitle = {TSFP-10, Chicago},
  year = {2017},
}

@article{YuanYP15,
  author = {Yuan, J. and Piomelli, U.},
  title = {Numerical simulation of a spatially developing accelerating boundary layer over roughness},
  journal = {J. Fluid Mech.},
  year = {2015},
  volume = {780},
  pages = {192--214},
  doi = {10.1017/jfm.2015.437},
}

@article{YuanP14a,
  author = {Yuan, J. and Piomelli, U.},
  title = {Estimation and prediction of the roughness function on realistic surfaces},
  journal = {J. Turbul.},
  year = {2014},
  volume = {15},
  pages = {350--365},
  doi = {10.1080/14685248.2014.907904},
}

@article{YuanYNPG14,
  author = {Yuan, J. and Nicolle, J. and Piomelli, U. and Giroux, A.-M.},
  title = {Modelling roughness and acceleration effects with application to the flow in a hydraulic turbine},
  journal = {IOP Conf. Ser.},
  year = {2014},
  volume = {22},
  pages = {022016},
  doi = {10.1088/1755-1315/22/2/022016},
}

@article{YuanP14b,
  author = {Yuan, J. and Piomelli, U.},
  title = {Roughness effects on the Reynolds stress budgets in near-wall turbulence},
  journal = {J. Fluid Mech.},
  year = {2014},
  volume = {760},
  pages = {R1},
  doi = {10.1017/jfm.2014.608},
}

@article{YuanP14,
  author = {Yuan, J. and Piomelli, U.},
  title = {Numerical simulations of sink-flow boundary layers over rough surfaces},
  journal = {Phys. Fluids},
  year = {2014},
  volume = {26},
  pages = {015113},
  doi = {10.1063/1.4862672},
}

@article{PiomelliY13,
  author = {Piomelli, U. and Yuan, J.},
  title = {Numerical simulations of spatially developing, accelerating boundary layers},
  journal = {Phys. Fluids},
  year = {2013},
  volume = {25},
  pages = {101304},
  doi = {10.1063/1.4825033},
}